PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_01DEC201E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 532aa    MW: 61158.2 Da    PI: 9.1356
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_01DEC201E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.43.5e-16118197190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF vr +ks+ + +  +  +++ vC + gk+ +e+++         +tr+gC+a++++ +++d+ w++++ + +HnH+
  Traes_2DL_01DEC201E.2 118 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAGKPLRENSR---------STRCGCNAMIRLLRSNDKGWYIAEHKDDHNHP 195
                            6*****************9999554.578899********9987655.........9******************************* PP

                   FAR1  89 la 90 
                            l+
  Traes_2DL_01DEC201E.2 196 LS 197
                            96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-12118197IPR004330FAR1 DNA binding domain
PfamPF105516.6E-29320412IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MSTNGVEVNR MCAAPGAMSS SFFPVESQDS MSVLNGAVCA AGCARPPVDA GVGKVCSEAT  60
SGWTRRVRVG KAPEEREMNP NRISALELSV RAYAEKRDGT VVYPSIGTSF DSLDEAYEFY  120
NLYSWECGFG VRLAKSRLNV ERKRCMQEIV CACAGKPLRE NSRSTRCGCN AMIRLLRSND  180
KGWYIAEHKD DHNHPLSLTC GQKMHWKSHK HIDRYTKDLV KQLRDNNVGL GKVFNIVGSF  240
FGTADKVPFT KRSLKTLCRK LNREQSDMDA VKRMAVLAEM KANDPDFNYT VQVDGESRVK  300
TLMWVTSRGF DQYRCFGDAI TFDTTYRTNL YDMPFGLFVG VNNHFQSIIF GGAMMRDEKE  360
DTFKWIFKEF IRMVGGKHPQ TIITDQARAM ELAIEAKLPN TVHHWCKWHV LKKAKESMGV  420
LWSKNSDFKM EFHKLVHHMI TEEEFEAGWQ QMLERYSLKK HPFLTQIYEV RHKWAKHFRG  480
VFCAKMTSTQ RSESANHMLK GYMPPGCPMH LFLKQFEKLQ FDRESEQSFQ EK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5BQJ30.0W5BQJ3_WHEAT; Uncharacterized protein
STRINGBRADI1G43906.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-66FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]